Detalhe da pesquisa
1.
ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods.
Genome Res
; 33(10): 1788-1805, 2023 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-37827697
2.
Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics.
Genome Res
; 33(10): 1757-1773, 2023 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-37903634
3.
Benchmarking multi-omics integration algorithms across single-cell RNA and ATAC data.
Brief Bioinform
; 25(2)2024 Jan 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-38493343
4.
scDecouple: decoupling cellular response from infected proportion bias in scCRISPR-seq.
Brief Bioinform
; 25(2)2024 Jan 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-38324621
5.
NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks.
Proc Natl Acad Sci U S A
; 120(15): e2216698120, 2023 04 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-37023129
6.
Decoding functional cell-cell communication events by multi-view graph learning on spatial transcriptomics.
Brief Bioinform
; 24(6)2023 09 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-37824741
7.
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data.
Brief Bioinform
; 23(1)2022 01 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-34472588
8.
simCAS: an embedding-based method for simulating single-cell chromatin accessibility sequencing data.
Bioinformatics
; 39(8)2023 08 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-37494428
9.
scGraph: a graph neural network-based approach to automatically identify cell types.
Bioinformatics
; 38(11): 2996-3003, 2022 05 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-35394015
10.
ITHscore: comprehensive quantification of intra-tumor heterogeneity in NSCLC by multi-scale radiomic features.
Eur Radiol
; 33(2): 893-903, 2023 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-36001124
11.
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions.
Nucleic Acids Res
; 49(W1): W483-W490, 2021 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33999180
12.
The prognostic value of intraoperative HRV during anesthesia in patients presenting for non-cardiac surgery.
BMC Anesthesiol
; 23(1): 160, 2023 05 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37161402
13.
DualGCN: a dual graph convolutional network model to predict cancer drug response.
BMC Bioinformatics
; 23(Suppl 4): 129, 2022 Apr 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-35428192
14.
SOMDE: a scalable method for identifying spatially variable genes with self-organizing map.
Bioinformatics
; 37(23): 4392-4398, 2021 12 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-34165490
15.
HGC: fast hierarchical clustering for large-scale single-cell data.
Bioinformatics
; 37(21): 3964-3965, 2021 11 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34096998
16.
CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images.
Bioinformatics
; 37(2): 285-287, 2021 Apr 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-33416830
17.
Prediction and analysis of metagenomic operons via MetaRon: a pipeline for prediction of Metagenome and whole-genome opeRons.
BMC Genomics
; 22(1): 60, 2021 Jan 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-33468056
18.
Single-cell alternative splicing analysis reveals dominance of single transcript variant.
Genomics
; 112(3): 2418-2425, 2020 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-31981701
19.
SCeQTL: an R package for identifying eQTL from single-cell parallel sequencing data.
BMC Bioinformatics
; 21(1): 184, 2020 May 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-32393315
20.
Using DenseFly algorithm for cell searching on massive scRNA-seq datasets.
BMC Genomics
; 21(Suppl 5): 222, 2020 Dec 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-33327944